Sequence
atgc intronic sequence ATGC exonic sequenceCCGAATCGCCCGTTTCCTCAAAGCCGGAAAGTACGCCGAACGTGTCGGGGCTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtcttatgtgatcgttggttgtttgtttctgctttgtttggttgctcggaaaatgagttgaacgtattgaaattaaaaactcggagatgaggtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os12g34510.1 (Oryza sativa), 5'ss of exon 1
CCGAATCGCCCGTTTCCTCAAAGCCGGAAAGTACGCCGAACGTGTCGGGGCTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtcttatgtgatcgttggttgtttgtttctgctttgtttggttgctcggaaaat-gagttgaacgtattgaaa--ttaaaaactcggagatgaggtt
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CCGCATCGCCAGGTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcag-----
upper sequence: Vv07s0104g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g51200.1 (Oryza sativa), 5'ss of exon 1
CCGAATCGCCCGTTTCCTCAAAGCCGGAAAGTACGCCGAACGTGTCGGGGCTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtcttatgtgatcgt--tggttgtttgtttctgctttgtttggttgctcggaaaatgagttgaacgtattgaaattaaaaactcggagatgaggtt--
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CCGCATCGCCCGCTACCTCAAGGCCGGCAAGTACGCGGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaaaccccatcccttcccctcccgctcgatccgcgtgggatcttccgatctcgtgtcccccgaatcgtgtgttctgatcacccattggctgtgttaatcgcag
upper sequence: Vv07s0104g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G107540_T01 (Zea mays), 5'ss of exon 1
CCGAATCGCCCGTTTCCTCAAAGCCGGAAAGTACGCCGAACGTGTCGGGGCTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtcttatgtgatcgttggttgtttgtt-tctgctttgtttg-gttgctcggaaaatgag--ttgaacgtattgaaattaaaaactcggagatgaggtt-------
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CCGCATCGCGCGGTACCTCAAGGCCGGCAAGTACGCGGAGCGCGTAGGCGCCGGGGCTCCCGTGTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaatcccccgccccacttcttcctctcttgctgtttaccaggtctacgccggtccggtctcgatgtttgaatcccccgtcgtgagtcgattgtttccttggttttcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110396126|gb|EC961803.1|EC961803EST: CTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAG GTTCTCGAGCTTGCTGGCAATGCTGCGAGGGACAACAAGAAGAGTAGAATC
genomic: CTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtct ... gtattcacagGTTCTCGAGCTTGCTGGCAATGCTGCGAGGGACAACAAGAAGAGTAGAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGAATCGCCCGTTTCCTCAAAGCCGGAAAGTACGCCGAACGTGTCGGGGCTGGCGCTCCCGTTTATCTCTCCGCCGTTCTCGAGTACCTTGCGGCTGAGgttggtgtcttatgtgatcgttggttgtttgtttctgctttgtttggttgctcggaaaatgagttgaacgtattgaaattaaaaactcggagatgaggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagatga