1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAGGATGAAGAGCAGGAACAACTCCGAAAAATTCTCACCCACATGGATTTTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctctgttttttttttttcctaatttctttttctgttgaaattcaaatgttttttctttttcttatttagattaaattttttatttttcaatatttttggatgctctctgaattgggttatttatttatttgttgtttcag
species | Vitis vinifera |
transcript | Vv07s0031g03090.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACAEST: gi|110719627|gb|EE094919.1|EE094919
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGAATGCTTTTCACGAACAG GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACAEST: gi|351044383|gb|FQ452935.1|FQ452935
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACAEST: gi|351045775|gb|FQ440960.1|FQ440960
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: TTCATTCTCTGCATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACAEST: gi|161709635|gb|FC058015.1|FC058015
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGATGAAGAGCAGGAACAACTCCGAAAAATTCTCACCCACATGGATTTTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctctgttttttttttttcctaatttctttttctgttgaaattcaaatgttttttctttttcttatttagattaaattttttatttttcaatatttttggatgctctctgaattgggttatttatttatttgttgtttcag
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