1 5' 3' |
AAGAGAGGACGAGATGATCAAGGCCATGTCTCTGAATCAGTTTCCACTATTTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctctctctctctctcgctccctccctctttacatacactctttcaaatcatatttttgcaaccttggagagggataattaagtggaggaagaca...
species | Vitis vinifera |
transcript | Vv07s0031g01980.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTAGAGCTTTTGGCGATCTTTCACCTGGAGGATCATCCTCTTTCAGAG TTGGAGAAGGTTCAGTGTTGAATACGAATACCACGGCAGCCAGTGAGAEST: gi|161714439|gb|FC063859.1|FC063859
genomic: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctct ... gtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGA
EST: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAG TTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTT
genomic: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctct ... gtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGAGGACGAGATGATCAAGGCCATGTCTCTGAATCAGTTTCCACTATTTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctctctctctctctcgctccctccctctttacatacactctttcaaatcatatttttgcaaccttggagagggataattaagtggaggaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaga