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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAGTGGACGAGCGCATCAGAACTCTGATCGAAAACGGCGTCAAAACTAGACACCGTTCTATGTTCGTTATTATCGGCGACAAGTCTCGTGACCAGgcactttctgccactactcgctactctccgttctttcttatattatttatatgtcgcgtttgctaatcctgttttgatttgaacag

Basic information

species Vitis vinifera
transcript Vv07s0031g01750.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G31850.1 (Glycine max), 5'ss of exon 1
GAAGAAAGTGGACGAGCGCATCAGAACTCTGATCGAAAACGGCGTCAAAACTAGACACCGTTCTATGTTCGTTATTATCGGCGACAAGTCTCGTGACCAGgcactttctgccactactcgctactctccgtt----ctttcttatattatttatatgtcgcgtttg---ctaatcctgttttgatttgaacag-------------------------
|||||||||||||||||| ||||||||| | || ||||| ||||||| ||| || ||  | ||||||||| | || || ||||||||||| ||||||||||  |||| |   | ||   |   |||||  ||    |  | ||      |  || |   |     |     ||   |  |   ||||||                             
GAAGAAAGTGGACGAGCGAATCAGAACTTTAATTGAAAATGGCGTCAGAACAAGGCATAGGTCTATGTTCATCATCATTGGCGACAAGTCCCGTGACCAGgt-ctttttat-attataggtccctctctatttgaaccgttttgggaactccatttaatggaaaagagttaaagagtagtgcaatttgagtgcttaatgcagtctctactgtgtgcag

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G15130.1 (Glycine max), 5'ss of exon 1
GAAGAAAGTGGACGAGCGCATCAGAACTCTGATCGAAAACGGCGTCAAAACTAGACACCGTTCTATGTTCGTTATTATCGGCGACAAGTCTCGTGACCAGg-cactttctgcca--ctactcgctactctccgttctttcttatattattt-atatgtcgcgttt----gctaatcctgttttgatttgaacag-------------------------
|||||||||||||||||| ||||||||| | || ||||| ||||||| ||| || ||  | || |||||| | ||  | |||||||||||||| ||||||| |  ||| |   |  ||| | |  |    |   ||  | ||  |  ||||         | |||    || ||   |  |   ||||||                             
GAAGAAAGTGGACGAGCGAATCAGAACTTTAATTGAAAATGGCGTCAGAACAAGGCATAGGTCCATGTTCATCATCGTTGGCGACAAGTCTCGAGACCAGgtctttttatattagcctaatagtgataggcttctcactatttgaccattttgggaactccatttaatggcaaagagtagtgcaatttgagtgctaaatgcagtctctactgtgtgcag