1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACATAGAAACATTGAAACAGCTGAAATAAGAGAGGCGTCTGCTTCAGTTTTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctctaaattcagttttttttttttggtttgaataataaaattatctctctctttaaaagtttatattgggttttgaaattctggatcatttgc...
species | Vitis vinifera |
transcript | Vv07s0031g01600.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|110709925|gb|EE085812.1|EE085812
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|110713219|gb|EE088948.1|EE088948
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|349832444|gb|FQ421005.1|FQ421005
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|110708701|gb|EE086542.1|EE086542
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|294966086|gb|GW837453.1|GW837453
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATATTTCTG TGAAATCGAGGTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|71874768|gb|DT023823.1|DT023823
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCCEST: gi|110388763|gb|EC953546.1|EC953546
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
EST: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTG TGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
genomic: TTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctc ... gatgttgcagTGAAATCGAGTTGTTTGAGGATTTAGGAGTTGTAAAAGAAGAATGGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATAGAAACATTGAAACAGCTGAAATAAGAGAGGCGTCTGCTTCAGTTTTTTGCAATCTTTCTTTTATTCTCTTCAATCTGAGTGATTCATTTTTCTGgtatgttctctaaattcagttttttttttttggtttgaataataaaattatctctctctttaaaagtttatattgggttttgaaattctggatcatttgc
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