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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGAGCGGCGGAGAGCGAGAGCGAGAGGGATTTAGCGATAGAGAGAGGGGGAGCGATCTGGTTGCCTTAGGGTTTTTTTCTGAGGGAATCGAAAAGgtcagtgagtgtgaaaaccctaattttcttattattgttcttgttcctgttgttctttcatttgaggaaaatggtgagtttgatttggtatatgatgatgatgatgatgacgatgatgttgtatgtgtgtgagaaagaggtgtgcttattgtgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 1
-GTTGCTGAGCGGCGGAGAGCGAGAGCGAGAGGGATTTAGCGATAGAGAGAGGGGGAGCGATCTGGTTGCCTTAGGGTTTTTTTCTGAGGGAATCGAAAAGgtcagtgagtgtgaaaacc-ctaattttctt---attattgttcttgttcctgttgttcttt-catttgagga---------aaatggtgagtttgatttggta------------tatgatgatgatgatgatgacgatgatgttg------tatgtgtgtgagaaagaggtgtgcttattgtgtgcag
       ||| |  | ||   ||||     || ||  ||| || || ||| | | |||  |  |  | |  ||||||||||    |  |  | ||   |||||||||||| |   ||  | || | ||||||   ||| ||  || | ||  |||| |   || || | ||  |         ||| | ||  ||| ||||||||            |||||||||||||||||||| ||||||| ||      | ||||||||||||||| |||||||| ||||||||||
CACGAGCGAGAGAGGAAGGAAGAGAAGAGAAGAGAGATAGGGAGAGCGAGCGTGAGAGGAAGATCTTCGATTTAGGGTTTTCAATTTCGT-ATTCAGCAAGgtcagtgagcgcctaattcactgaatttctttcaattcttaatcatttttttgttttctgttacagtagaataccaacccccaaaagctgtttttcatttggtagtagtactagtatatgatgatgatgatgatgatgatgatgatgacgatatttgtgtgtgagaaagaagtgtgcttgttgtgtgcag

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 1
GTTGCTGAGCGGCGGAGAGCGAGAGCGAGAGGGATTTAGCGATAGAGAGAGGGGGAGCGATCTGGTTGCCTTAGGGTTTTTTTCTGAGGGAATCGAAAAGgtcagtgagtgtgaaaacc-ctaattttcttattatt-------gttcttgttcctgttgttctttcatttgagga-----------aaatggtgagtttgatttggtatatg---atgatgatgatgatgacgatgatgttgtatgtgtgtgagaaagaggtgtgcttattgtgtgcag
                      |||  |||| |||   | ||  ||| | | | |   |||||  | |  ||||||||||    |  |  | ||   |||||||||||| |   ||  | |  | ||||||   |||        || || ||  |  | |||| | |    || |           ||| | ||| ||| || |||||   |   ||||||||||||||||| |||| | | | ||||||||||||||| |||||||| ||||||||||
----------------------GAG-AAGAGAGATAGGGAGAGCGAGCGTGAGAGGAAGATCT--TCGATTTAGGGTTTTCAATTTCGT-ATTCAGCAAGgtcagtgagcgcctaattcaccgaatttctttcaattcctaacaattttttttttttgttttctgttaccgtagaactccaacccccaaaagctgattttcatctggtagtagtatatgatgatgatgatgacaatgacgatttttgtgtgtgagaaagaagtgtgcttgttgtgtgcag