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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAAATGGCTAGCAATCAGGAAGGGCAGCAAAACCAAGCTGGTAGACACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttcaaatccatgaacagccatttgccattgttccatttcaagctattttcttgggactgatggagggtttttactctctcttttgttttctttatgtgtgtatcatgtag

Basic information

species Vitis vinifera
transcript Vv07s0031g00350.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185325|gb|CF604678.1|CF604678
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|71859221|gb|DT008276.1|DT008276
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|37185179|gb|CF604532.1|CF604532
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|71857191|gb|DT006246.1|DT006246
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|71858580|gb|DT007635.1|DT007635
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|352785883|gb|FQ475886.1|FQ475886
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|110728674|gb|EE104447.1|EE104447
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|71855811|gb|DT004866.1|DT004866
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|110701151|gb|EE078431.1|EE078431
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|37189880|gb|CF609229.1|CF609229
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|71856551|gb|DT005606.1|DT005606
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|29782008|gb|CB346952.2|CB346952
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
EST: gi|30124789|gb|CB910128.1|CB910128
EST:     ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAG                         TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG
genomic: ACCAGGAGGTTGGCCACAAGAGTCTGTTACAGAGTGATGCTCTTTACCAGgtaaagttca ... tatcatgtagTATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAG