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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACTGCTATGCTGACATGTGAGAGATTTTGGCAGAAGAAAGTGCCTCTAAATAGGACTCTTTTTGGTAACTATGATGTGTTGTACATTAATTATCCAGgtagtaagcccatctctcttgtaattcctatttgtcttactattatttaactgtgctgagctagagcttgaaagagtcaatatcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04710.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 5
ACCACTGCTATGCTGACATGTGAGAGATTTTGGCAGAAGAAAGTGCCTCTAAATAGGACTCTTTTTGGTAACTATGATGTGTTGTACATTAATTATCCAGgta---gtaagcccatctctcttgtaattcctatttgtcttactattatttaactgtgctgagctagagcttgaaagagtcaatatcag
|| |||||    || |||| |||||| |||||||| |||||||| |||||||||||||  ||||||||  | |||| |||  ||||||||| |||||||||||   ||    |    | |||  | ||  |  |||   |||| |  ||| |  |    |      |||  | ||   ||   ||| ||
ACAACTGCAGCTCTTACATATGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGCCTTTTTGGCGATTATGCTGTTGTGTACATTATTTATCCAGgtagttgtgtttctgagtttctccttataacattttactttaccagcattgagttactat----ctgagactaaagctgtttgtattag

upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G32640.1 (Glycine max), 5'ss of exon 5
ACCACTGCTATGCTGACATGTGAGAGATTTTGGCAGAAGAAAGTGCCTCTAAATAGGACTCTTTTTGGTAACTATGATGTGTTGTACATTAATTATCCAGgta---gtaagcccatctctcttgtaattcctatttgtcttactattatt-taactgtgctgagctagagcttgaaagagtcaatatcag
|| |||||    || |||| |||||| |||||||| |||||||| |||||||||||||  ||||||||  | |||| |||  ||||||||| |||||||||||   ||    |    | |||  |  |  |  |||   |||  | |||  | | |         | |||  | ||   ||   ||||||
ACAACTGCATCTCTTACATATGAGAGGTTTTGGCACAAGAAAGTCCCTCTAAATAGGAGCCTTTTTGGCGATTATGCTGTTGTGTACATTACTTATCCAGgtagttgtgtttctgagtttctccttgtaacattttactttaacagtatcgttattcattactatttgagactaaagctgtttgtatcag