Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGATGCAGGCCCTTTCAAGGCGATTAGGCCACCAATCCTTCAATCAGTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttcttctcttctctattttctagggttttacccacatttctgattccaaattgcgcccttcatttcagttctaaggttataaattctgggccttctttgattactatatgttgatttgatctgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04440.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719785|gb|FC066692.1|FC066692
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|161720302|gb|FC071155.1|FC071155
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|161719288|gb|FC068264.1|FC068264
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|71871395|gb|DT020450.1|DT020450
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|77580795|gb|DV219305.1|DV219305
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|110424142|gb|EC990498.1|EC990498
EST:     CAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: CAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|71864241|gb|DT013296.1|DT013296
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
EST: gi|161718481|gb|FC066331.1|FC066331
EST:     GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACT                         ATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG
genomic: GTCTCCCGCAATTTCCTCTCTCAAATCCATTTACCCCCTCTCTGATCACTgtatcccttc ... tgatctgcagATTATGGTGCTGATCATCCACGTCTCGGATCTACTCTTGCCCCCAAGGGTG