1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTGAGAGGATTGGTCAACAAGCTTGTATCTCGCTCTCTCAACGTCGCCGGAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttctctccttctttttccatctttgttccatttttcatcttgtggtctctgatgttcccttttttgtttcgttcatgaggtaacataagaaat...
species | Vitis vinifera |
transcript | Vv07s0005g03790.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|30305880|gb|CB982674.1|CB982674
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCGATGTTCCAAAAGGAGTTGCTEST: gi|71858858|gb|DT007913.1|DT007913
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCCEST: gi|161716900|gb|FC064979.1|FC064979
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|71857444|gb|DT006499.1|DT006499
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|294967254|gb|GW840129.1|GW840129
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|71864238|gb|DT013293.1|DT013293
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|30130655|gb|CB915994.1|CB915994
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|71861252|gb|DT010307.1|DT010307
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCGGAGTTGATGAGCAAATATGGAATCAATTTTCCAAAAGGAGTTGCTEST: gi|71856468|gb|DT005523.1|DT005523
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCTEST: gi|37187335|gb|CF606688.1|CF606688
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
EST: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAG GGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
genomic: GAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttc ... gtgaaatcagGGGGCTGAGTTGATGAGCAAATATGGAATCAATGTTCCAAAAGGAGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAGAGGATTGGTCAACAAGCTTGTATCTCGCTCTCTCAACGTCGCCGGAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttctctccttctttttccatctttgttccatttttcatcttgtggtctctgatgttcccttttttgtttcgttcatgaggtaacataagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa