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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGTTCGCTTACGAAGGCCAACCACCTCTCTTCTTAGACTTCAACCTCCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttctcgcccgtttgtttccccggaaatcagtttctaggaaatttgaaaacttagatttgtcccagaaatgcagatgagacccaatgcgtgaatt...

Basic information

species Vitis vinifera
transcript Vv07s0005g03680.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406635|gb|CF212262.1|CF212262
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|71890478|gb|DT039533.1|DT039533
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|349812583|gb|FQ407202.1|FQ407202
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGGAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|351029239|gb|FQ435439.1|FQ435439
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|351045986|gb|FQ441369.1|FQ441369
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|351027875|gb|FQ448445.1|FQ448445
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|110383570|gb|EC947949.1|EC947949
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|33401651|gb|CF207278.1|CF207278
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|351045639|gb|FQ440824.1|FQ440824
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|71867344|gb|DT016399.1|DT016399
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
EST: gi|71869053|gb|DT018108.1|DT018108
EST:     CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCG                         GGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA
genomic: CCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttct ... tatcttgcagGGAAAACCACTTTGCTGAGGATTTTGGCAGGGAAGCACATGGTTGGCGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCAGTTCGCTTACGAAGGCCAACCACCTCTCTTCTTAGACTTCAACCTCCAAATATCTCCTGGTTCTCGATGCCTTCTCGTCGGCGCCAACGGATCCGgtacatttctcgcccgtttgtttccccggaaatcagtttctaggaaatttgaaaacttagatttgtcccagaaatgcagatgagacccaatgcgtgaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agatgaga