Sequence
atgc intronic sequence ATGC exonic sequenceCTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G00960.1 (Glycine max), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttc--tctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaaca-gcctaagaggattcttcatggtttattttttgcag
|| ||||| || || ||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||| || ||||| ||||| || ||||||||||||| | | | | || ||||| || ||||||| ||| || | | | || || | || || | || | | | |
CTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGgtaattaaattgatccaattatcc--aactcagcctcctttaatctcctttagcatagagaaaattgttattcatctctttg-tgaatggcatgtattggcag-------------------------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G27940.1 (Glycine max), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| ||||| || || ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||| || ||||| ||||| || ||||||||||||| | ||| |||| ||||| || ||||||| | | | ||| | | | | || | | || | || || | | || |
CTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGgtaat-----taatcaaattatcc--aactaagcctcctttaatctcctt---tgtaacaaaa-----agagaaatttttttattcatctctctgtgaatgatatgaattggcag----------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G41010.1 (Glycine max), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| ||||| || || ||||| || ||||||||||| |||||||||||||||||||| ||||| || ||||| || |||||||| || || ||||||||||||| || |||| |||| || || |||| | || | | | | |||||| | | | | | | | | | | || || |
CTTAGGAAGGGTCTTTGGTCACCAGAAGAAGATGAAAAACTTCTGAGGCATATTACGAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGgtactcc-----aacactctatagtctataccaccccattta--------gcataaaatcaagggaagaaaattgtggttcatttc--ctgtcaatgtcgtttattggcag--------------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G38410.1 (Glycine max), 5'ss of exon 2
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| ||||| || || ||||| || ||||||||||| |||||| ||||||||||||| ||||| || ||||| || |||||||| || || ||||||||||||| || |||| ||| || || |||| | || | | | || | | | | || || ||| ||| |
CTTAGGAAGGGTCTTTGGTCACCAGAAGAAGATGAAAAACTTTTGAGGCATATTACTAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGgtactcc-----aacactgtatagtctataccaccccatttagcataaaaatcaagggaagaaaactgtagttcattttcccgt-caatgtcctttattggcag---------------------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S149_164V6.1 (Physcomitrella patens), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| | ||| || || |||||||||||||||||||||||||| || | | | |||||| |||||||||||||||||||| |||||||| ||||| ||| || || |||||| || |||| | | || | | ||| | || | || | | ||| | ||| || || |||
CTGAAGAAGGGGCTCTGGTCTCCTGAAGAAGATGAGAAACTGGTGCGCTACGTAACCAAGCATGGCCATGGCTGCTGGAGCGTCGTCCCAAAACAAGCTGgtgag-ttcatccctaaactaggcta---ctcagccgtctacatgatcaatggagtggccgcaccgcc---atctcctcgatgaattctagctaaaa------tctcgccgtt------------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S189_29V6.1 (Physcomitrella patens), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| | ||||||| | ||||| || || |||||||| || ||| || | | ||||||||| | |||||||||||||||||| |||| || |||||||||||| | | | | || | | | | || ||| | | ||| | | | | ||| | ||| | || ||
CTGAAGAAAGGCTTGTGGTCCCCGGAGGAAGATGAAAAGCTTGTGCGATACATTACCAAGCACGGCCATGGCTGCTGGAGCGCTGTTCCCAAGCAAGCAGgt-tcgtgcgcctgcttcatgtcttacaagttgtagattggatccttaatgtcgatcgtcgacaatgggccagca-gccaatttgg---agcttgcgaaactttg--------------------
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S24_48V6.1 (Physcomitrella patens), 5'ss of exon 1
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
|| | |||||| || |||||||| || |||||||| || || || | | || ||||| | |||||||||||||||||| |||| ||||| ||||||||| | | || | | | || | || | | | | | | || || || | ||| || || | || |||
CTCAAGAAAGGTCTGTGGTCTCCAGAGGAAGATGAAAAGCTCGTGCGATACATCTCCAAGCACGGCCATGGCTGCTGGAGCGCTGTTCCAAAACAAGCAGgt-tggctcatcttcttaatgtct--agcctaatgatacaagcagaaaacccaaagatgacaactttagaatttgctttagaccttaaggttctcaa-----tcctca-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713802|gb|FC063790.1|FC063790EST: TATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAG GTCTGCAAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATTAACTACTTGA
genomic: TATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattcttta ... ttttttgcagGTCTGCAAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATTAACTACTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAAGGAAAGGCCTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAGGCATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTCCCAAAGCAAGCAGgtattctttataaacaaactatcctcaatctcacctccttctctgtttgtgtgtgtgtttgacccttcaaaattacgttaatgtacaacagcctaagaggattcttcatggtttattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG