1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGGACGTGGTGGCAATTTCGACGTCTCTTTCCTCTCCGAGTTTTGATCCGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagcttttggttttggttttttgttttttgttttttttttttgttttatgtttgttgctgtagggatttcatccttgtcaagaaggatttgagcttca...
species | Vitis vinifera |
transcript | Vv07s0005g02110.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATTEST: gi|110700065|gb|EE077677.1|EE077677
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATTEST: gi|37189623|gb|CF608972.1|CF608972
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTAATEST: gi|71861291|gb|DT010346.1|DT010346
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATTEST: gi|71860993|gb|DT010048.1|DT010048
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATTEST: gi|71860541|gb|DT009596.1|DT009596
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
EST: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTG GATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
genomic: CGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagctttt ... tttgtcctagGATATAAAATCTCCTGAGAAAAATCCAGACGCTACTCTTGAATCTGCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGACGTGGTGGCAATTTCGACGTCTCTTTCCTCTCCGAGTTTTGATCCGATTTGCGCTTCGGATTCGGTTTCGGCTGATTCATCCGGCACTCAAGTGgtgagcttttggttttggttttttgttttttgttttttttttttgttttatgtttgttgctgtagggatttcatccttgtcaagaaggatttgagcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagga