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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTCGACCTACCCTATTTCTCTCTTCCCTACACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccggcagttcttccgatttcagcttcgtttcagctcaatcactgctctgtgtctgtttgagtgtgtgatgttttgttttttttcttttttgaag

Basic information

species Vitis vinifera
transcript Vv07s0005g00880.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857320|gb|DT006375.1|DT006375
EST:     ACCCCATTCACATCTCCGACGCTGGAACCTTTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|352778135|gb|FQ467188.1|FQ467188
EST:     ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|352782338|gb|FQ470241.1|FQ470241
EST:     ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|110713618|gb|EE089697.1|EE089697
EST:     CGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: CGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|352776927|gb|FQ474234.1|FQ474234
EST:     ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|161712595|gb|FC062197.1|FC062197
EST:     ATTCACATCTCCGACGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|352773939|gb|FQ473071.1|FQ473071
EST:     ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|352773568|gb|FQ472350.1|FQ472350
EST:     ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
EST: gi|71858005|gb|DT007060.1|DT007060
EST:     ACCCCATTCACATCTCCGACGCTGGAACCTGTATCGTATACACCTGAATC                         GGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG
genomic: ACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccg ... ttttttgaagGGTTGAGTAGAAGGGAAATGATGATGTACGCAGCGTCTCGTCGGTTATGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCTCGACCTACCCTATTTCTCTCTTCCCTACACCCCATTCACATCTCCGGCGCTGGAACCTGTATCGTATACACCTGAATCgtatgctccggcagttcttccgatttcagcttcgtttcagctcaatcactgctctgtgtctgtttgagtgtgtgatgttttgttttttttcttttttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA