1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCAAAAAGTTATGCTGTGATGGTTTTGATTCTCCCTTCGGACAGTGGTAGAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAGgttctctttgattctcatctctttttatcagctgccttgtataaatgttaggtctgacccagcattcctatgtggtaatacagactctgtttaggctttt...
species | Vitis vinifera |
transcript | Vv07s0005g00850.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAG GTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCCEST: gi|71862171|gb|DT011226.1|DT011226
genomic: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAGgttctctttg ... atcctttcagGTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCC
EST: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAG GTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCCEST: gi|161721718|gb|FC070470.1|FC070470
genomic: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAGgttctctttg ... atcctttcagGTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCC
EST: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAG GTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCC
genomic: GAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAGgttctctttg ... atcctttcagGTAGCTGTTGCTCTTTCTCATGCAGCGATTCTGGAAGAGTCTATGCGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAAAAGTTATGCTGTGATGGTTTTGATTCTCCCTTCGGACAGTGGTAGAAAATGGCGTGAACATGAGTTGGAGCTTGTTGAAGTTGTTGCAGACCAGgttctctttgattctcatctctttttatcagctgccttgtataaatgttaggtctgacccagcattcctatgtggtaatacagactctgtttaggctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaga