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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgcatctgttttgataacgctaaaggtcggtcatttattctggttagtagctttagatgtggtgtttttactctttgtttggttgttgagaaa...

Basic information

species Vitis vinifera
transcript Vv07s0005g00320.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110684800|gb|EE062491.1|EE062491
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|37189288|gb|CF608637.1|CF608637
EST:     AGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: AGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|161720073|gb|FC066729.1|FC066729
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|71876345|gb|DT025400.1|DT025400
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|351031962|gb|FQ460219.1|FQ460219
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|351048120|gb|FQ442090.1|FQ442090
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|351017085|gb|FQ424512.1|FQ424512
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|161712126|gb|FC061498.1|FC061498
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|161716478|gb|FC065201.1|FC065201
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|161720061|gb|FC065449.1|FC065449
EST:     CGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|110688099|gb|EE066267.1|EE066267
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|352763703|gb|FQ473406.1|FQ473406
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|71856812|gb|DT005867.1|DT005867
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
EST: gi|349807898|gb|FQ402289.1|FQ402289
EST:     CTCTTCCCGAACCCTAGTTTCTCCGAG                         TTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC
genomic: CTCTTCCCGAACCCTAGTTTCTCCGAGgtatgcatgc ... ttgtcaacagTTTCAGGAACAATGAGTAGTCGTGCGAGTAGAACTCTTTATGTTGGCAATC