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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCCCTCCCCAATTTCTCAGATATTCGGGATTAATACTCTCAAGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattccacccattttggcttccttcgttttttccttccagtttatatgttttgtggcactgtatgtgtacatttactttttggaattgttattctg...

Basic information

species Vitis vinifera
transcript Vv06s0080g01080.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710128|gb|EE086190.1|EE086190
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|29786222|gb|CB343829.2|CB343829
EST:     AATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110380195|gb|EC945441.1|EC945441
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110375015|gb|EC939967.1|EC939967
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110396671|gb|EC962365.1|EC962365
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|32267862|gb|CD717021.1|CD717021
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|28964729|gb|CB343762.1|CB343762
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110422039|gb|EC988350.1|EC988350
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCGGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|32269983|gb|CD719142.1|CD719142
EST:     AGCTCTTAGCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110695956|gb|EE074565.1|EE074565
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|33408882|gb|CF214509.1|CF214509
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|32272011|gb|CD721170.1|CD721170
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|71874414|gb|DT023469.1|DT023469
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110705394|gb|EE082194.1|EE082194
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|30323103|gb|CD006365.1|CD006365
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|30323096|gb|CD006358.1|CD006358
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110717402|gb|EE093225.1|EE093225
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110717466|gb|EE093345.1|EE093345
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|110702625|gb|EE078761.1|EE078761
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
EST: gi|30125506|gb|CB910845.1|CB910845
EST:     AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCG                         TCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA
genomic: AGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattcc ... tatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGCCCCTCCCCAATTTCTCAGATATTCGGGATTAATACTCTCAAGCTCTTATCCATCAAATGACGATTGGTTCAGGAGGATCCAGCGTCGTCGgtgagattccacccattttggcttccttcgttttttccttccagtttatatgttttgtggcactgtatgtgtacatttactttttggaattgttattctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc