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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACTGTTCTCCAACGAATCGATCCCTTCGTCGAAGAGATTTTAATCACCGCCGCTCATGTCACCTTCTATGAATTCAACATCGACCTCAGCCAATGGgtactccctctctctctcttctcccccactcttttttttttttttttcccctcattatttgcttttcattcatttacag

Basic information

species Vitis vinifera
transcript Vv06s0080g00860.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGATCCCTTCGTCGAAGAGATTTTAATCACCGCCGCTCATGTCACCTTCTATGAATTCAACATCGACCTCAGCCAATGGgtactccctctctctctcttctccccc---actcttttttttttttttttcccctcattatttgctt--ttcattcatttacag-------------------------
 ||||| || || || ||  |||| |||  |||||| || ||  | ||||||||||| || |||||| |||| || |||||||||||||||| ||| |||||   |  || | | |||  |||| |    |  |  |    ||  ||  |  | |  | ||    |    ||| ||||   | |                         
CCTCACCGTGCTGCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGCCCACGTCACCCTCTACGACTTCAACATCGACCTCAACCAGTGGgtgagcgatccccccctccactcctcgcggatccgatccggttggttgcttgcttggtgatcctgtgagctcactcatgcgctgtgttttttttccttttttgtttcag

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGATCCCTTCGTCGAAGAGATTTTAATCACCGCCGCTCATGTCACCTTCTATGAATTCAACATCGACCTCAGCCAATGGgtactccctctctctctcttctcccccactcttttttttttttt----tttcccctcattatttgcttttc--attcatttacag
|||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| | | |||| ||| | ||     |  || ||||| ||||  |    ||  | |||||   |  |||     |||  ||| |||
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttacttctgtttttattttcatcccattctctctcatcgctctcttccgcgattgctttgcag

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G08370.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGATCCCTTCGTCGAAGAGATTTTAATCACCGCCGCTCATGTCACCTTCTATGAATTCAACATCGACCTCAGCCAATGGgtactccctctctctctcttctcccccactcttttttttttttttttcc-cctcattatttgcttttcattcatt-tacag
|||||| |||||||| || |||||||| | | |||| || ||  | ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||     |||  ||  |||||     ||   |||  | |||  ||  |  ||| || |||    | || ||  |  | |||
TCTCACAGTTCTCCAGCGGATCGATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAACATTGAGCTCAGCCAATGGgt-tagtctcaatcaatcttcgattacataatttgatgtttgcttccctacctaatgattgatctgtcttttgtcattcag