1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCGATTCCAGGCTCTGTTTCTCGCAGGATCGCTACATATTTCACATACTCAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtcatcgcttcttcgttttattttttaatttttggttttattataatttttgttttgttcggttttttggttgatctggcccgggagctaggg...
species | Vitis vinifera |
transcript | Vv06s0080g00800.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTTGCATGGCCAACGACACCTTCGGAA GGCGGATCCCATTTTCATACCTCGAAGATATTCAGATGAGGTTCATGAAGAEST: gi|110394745|gb|EC960031.1|EC960031
genomic: TTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtc ... tttaatccagGGCGGATCCCATTTTCATACCTTGAAGATATTCAGATGAGGTTCATGAAGA
EST: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAA GGCGGATCCCATTTTCATACCTCGAAGATATTCAGATGAGGTTCATGAAGAEST: gi|18458167|gb|BM436445.1|BM436445
genomic: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtc ... tttaatccagGGCGGATCCCATTTTCATACCTTGAAGATATTCAGATGAGGTTCATGAAGA
EST: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAA GGCGGATCCCATTTTCATACCTCGAAGATATTCAGATGAGGTTCATGAAGAEST: gi|110718806|gb|EE096063.1|EE096063
genomic: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtc ... tttaatccagGGCGGATCCCATTTTCATACCTTGAAGATATTCAGATGAGGTTCATGAAGA
EST: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAA GGCGGATCCCATTTTCATACCTCGAAGATATTCAGATGAGGTTCATGAAGA
genomic: CAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtc ... tttaatccagGGCGGATCCCATTTTCATACCTTGAAGATATTCAGATGAGGTTCATGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGATTCCAGGCTCTGTTTCTCGCAGGATCGCTACATATTTCACATACTCAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtcatcgcttcttcgttttattttttaatttttggttttattataatttttgttttgttcggttttttggttgatctggcccgggagctaggg
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