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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATGAGCCCCCGCAAGTTCATTTCACTGCTGCACCCCTCCTCTGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctctagttctctctccctgtaattttctctatctttgtatttgcgtgttggtttgtagtgatgattaagggctttgatttggtttgaatgagcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01600.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325060|gb|CD008322.1|CD008322
EST:     GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|37188500|gb|CF607849.1|CF607849
EST:     CCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: CCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|30326466|gb|CD009728.1|CD009728
EST:     GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|110695251|gb|EE073052.1|EE073052
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|352787105|gb|FQ476332.1|FQ476332
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|37188204|gb|CF607553.1|CF607553
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|110689604|gb|EE065975.1|EE065975
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|37188905|gb|CF608254.1|CF608254
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|22012639|gb|BQ797673.1|BQ797673
EST:     TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: TGCAAAACCCTAGCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG
EST: gi|32272311|gb|CD721470.1|CD721470
EST:     GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCGCAA                         AATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGGGGCAACACCTG
genomic: GCAACACAAGAGCCTGAGGGTCGCCGTTCACATCACAAgtactctcta ... gaatgagcagAATGAAGGTGATCGCCGCATACTTGCTTGCTGTGTTGGGAGGCAACACCTG