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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01310.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 1
------GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtg--agtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttg--tctataatttgaaat-ggtttactgatacttagacaaaatgtttcag
      || |||| ||| || |   ||||       |  || || || | ||||||| | |||||||||||||||||||||||||| || ||| ||||||||||||||      ||  || ||||    | ||||  |  ||  ||  |  ||     ||  | | ||| |    |  || |  |  | ||| |||  | | ||| |   |   |      | |||||   
AGGCACGAGGAAGTGGTAGACGGTTTGCCG------GCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGgtattgaatttttgcagtt----tcgatt-ctgaataattgaatggttcattga--tttgattcaatgatggttggaattgaaaatatgatttcgattttcacgtgtgttacttgactgtttag-

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G19420.1 (Glycine max), 5'ss of exon 1
------GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtg--agtttcatgtagtt---atgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcag
      || |||| ||| || |   ||||       |  || || || ||||||||| | |||||||||||||||||||||||||| || ||| | ||||||||||||      ||  || ||||   ||  |  || ||||| | |||| |    ||  |    |  | || |     ||| ||| |  |||||    |    |  |  |   |||              
AGGCACGAGGAAGTGGTGGACGGCTTGCCG------GCGGATGACGACGGGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCGCCTGGTTTAGgtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaa----aatgtgttttcaattt----tcacgtgttactgtgtag--------------

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 1
------GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcag
      || ||||  || || |  | ||| ||       ||||| || |  || ||| |  |||| ||||||||||||||||| || || ||| |||||||||||||||||    || |   ||        ||| || | | |||  |||    | || | | || ||   || | ||   ||| |  |  |||  |||| |  |  || |     ||| || ||
AGGCACGAGGAAGTTGTGGACGCGCCGCCGCAG------GACGACGACGATTTCGTGTCGAGGCATTCGCATATGAAGTATGAGCTCAGAGATTCACCTGGTTTAGgtgaga---atatgaataaa----gatatatgctttctttgaagttg--aaaattttgatgtaaagtttaatt---tatgagct--aattttttatt--ttttttgtatggatggtttag