Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCGTTACAAATGGGAGCCCCTGCGTGAAGACTTGGAGTCCGGTAACTCGAATTTCCCCCATGTGGTCGTGCAAATCCCAATGTACAACGAAAAAGAGgtatcaatctccactctcactctgtcctttctcacttcttctgccatcgttgattttcttatgattcagcattatcgtttcttcttttcctttttctttttttttttttgtttttttctcgcaattttaatgttgggtttccgggaaaactctaaagtcgattgctttttctgttcatgggtgtctgggtcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01230.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01230.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G05350.1 (Glycine max), 5'ss of exon 1
TAAGCGTTACAAATGGGAGCCCCTGCGTGAAGACTTGGAGTCCGGTAACTCGAATTTCCCCCATGTGGTCGTGCAAATCCCAATGTACAACGAAAAAGAGgtatcaat-ctccactctcactctgtcc-tttctcacttcttctgccatcgttgattttcttatgattcagcattatcgtttcttcttttcctttttctttttttttttttgtttttttctcgcaattttaatgttgggtttccgggaaaactctaaagtcgattgctttttctgttcatgggtgtctgggtcag
  |||||||||| |   ||||||| |  || ||| | || |  ||   ||  |  ||||||   ||  |  | ||||||||||||| |||||||||||||||| |||  |   |  |  | | | ||  | |||   |  |||||   |  |  || || |||| |||    |||||  || ||  | ||  | |||||                                                                                                
ACAGCGTTACAACTACAAGCCCCTCCAAGACGACGTCGAATTGGGCTCCTTCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaacgataaccagattttctctgtctctgtgtctttctgggttaatgaatattattattatt----attattattacta-tgttgttgtttctgggccag-----------------------------------------------------------------------------------------