Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01120.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag
||| ||  |  | |  |        |  |||||    || |||||| ||||||||||| |||| || |||||||| || |||||||||||||| ||||||||      |  |||  | |||   || |||  |  ||||     |  ||  ||||   || ||   |    | || |     |   | ||
CGACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtc-----tctccctctctctccctcctgctctcaatttcaatctcatttcatttctgat-aacacgccttgattccggatctg-cgtag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgt------tcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag--------------------------------------------------------------
||| ||  |  |||  |      | |  |||||    || |||||| ||||||||||| | || || |||||||| || |||||||||||||| ||||||||        | |    ||  |||||     |  |  ||    |   || || |   | | | | ||||| ||       | |      | | | |                                                              
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttat---tccccaatttctatttcttgca---ttggattttgcatttct-tggattttga-----atcaatttgtggcgttttctttggtaatgcag
 || ||    ||||  |||||| ||  |||||| ||||| || ||| |||||||||||||||||||  | |||||||| |||||||| ||| ||||||||||   |||    ||| |  ||| |||| |   ||   |   |  ||  |  | |  |||| |||      ||  | || |   | ||  |||  |  | || 
GGAACCCCACACGCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGgtaaattagttatccactttttttattccagacaccctccaacgttaaaaatatgcggatattgctcatcatagagttataa-gattgatttaatggttca-

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag
||| || ||       || ||| |||  |||||    || |||||| |||||||||| ||||| ||  | |||||||| |||||||||||||||||||| ||   | || ||    ||||| ||||||    |   | ||  ||||  |  |  | | |||  ||  |    |    ||  |        
CGAACCCTCCGATTCCCCCTGGGCCGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgta-ataataccttcttttctctttcttttcctctttgttttattttctttacatcgtatcgtttctt--tctccgtttcag--------

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgt----------tcgttattccccaatttctattt------cttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag--------
||     ||  | |  |||||| | |  |||||    || |||||| |||||||||| ||||| ||  | |||||||| |||||||||||||||||||| ||          || ||  ||     ||||| |||       || |     || || ||||| |||  || | | ||| |||        |   |||||    |          
CGCCGATTCCCCCCTCCCTTGGGCTGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataataacatcatttctctttcttttctttttattctctttactccctatctttcattttttgttttattattca-tttactctacctcacttggtgtctctctctttcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 1
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGg--ttcgttattccccaatttctatt---tcttgcatt---ggattttgcattt-----cttggattttgaatcaatttgtggcgttttctttggtaatgcag---------------------------------------------
 |||||   |||   ||  ||| | | ||| || |||||||| || |||||||| ||||| ||||| || || |||||||| |||||||||||||||||||  || ||| |||     ||  || |   || |  ||      || ||| || |     ||  ||| | || ||  | ||||   |    ||| | | ||  |                                             
TGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCAGTTTCATCGTATCAACATTAAGCATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGATCTGgtatttgttcttcgtttcttcttagtaaatcgttaatgtgaaaatgttgaatgtgaagactcagatct-gattcgttatgtgaaatcgaatttcgaattgtggatgtcttgtttaattaatctgttgttgttgttttggattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863681|gb|DT012736.1|DT012736
EST:     ACATCGAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|110723599|gb|EE101093.1|EE101093
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|110720316|gb|EE096132.1|EE096132
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|294966676|gb|GW839667.1|GW839667
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71858409|gb|DT007464.1|DT007464
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71855119|gb|DT004174.1|DT004174
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|37187432|gb|CF606785.1|CF606785
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161711870|gb|FC057898.1|FC057898
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|37190355|gb|CF609704.1|CF609704
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161709143|gb|FC058403.1|FC058403
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|110723284|gb|EE100418.1|EE100418
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|110726996|gb|EE103281.1|EE103281
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71857785|gb|DT006840.1|DT006840
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161706361|gb|FC057565.1|FC057565
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862919|gb|DT011974.1|DT011974
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161707259|gb|FC057334.1|FC057334
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|77584429|gb|DV221284.1|DV221284
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|33401793|gb|CF207420.1|CF207420
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCGCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161718332|gb|FC065009.1|FC065009
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|110685692|gb|EE062633.1|EE062633
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71858870|gb|DT007925.1|DT007925
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71872337|gb|DT021392.1|DT021392
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71860355|gb|DT009410.1|DT009410
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862304|gb|DT011359.1|DT011359
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71859936|gb|DT008991.1|DT008991
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71865243|gb|DT014298.1|DT014298
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|46917845|gb|CN547174.1|CN547174
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71858968|gb|DT008023.1|DT008023
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACT-CAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71864546|gb|DT013601.1|DT013601
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCAATCTGTACTCCCGCGGACTACAATACT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACT
EST: gi|110713549|gb|EE089565.1|EE089565
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71873327|gb|DT022382.1|DT022382
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71868252|gb|DT017307.1|DT017307
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862625|gb|DT011680.1|DT011680
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161720930|gb|FC070328.1|FC070328
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862326|gb|DT011381.1|DT011381
EST:     ACATCGAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71858502|gb|DT007557.1|DT007557
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862357|gb|DT011412.1|DT011412
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71861431|gb|DT010486.1|DT010486
EST:     ACATCGAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71861781|gb|DT010836.1|DT010836
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71864477|gb|DT013532.1|DT013532
EST:     ACATCGAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71859235|gb|DT008290.1|DT008290
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71870729|gb|DT019784.1|DT019784
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71886436|gb|DT035491.1|DT035491
EST:     ATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|161714110|gb|FC063822.1|FC063822
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
EST: gi|71862700|gb|DT011755.1|DT011755
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttatt ... ggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT