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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCGTCAACTCGGCAGCCATGAACCACCCAGTCTCCCTCTTCTTCCTTCTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAGgtcccttcttctcacattctgtttggttggtcagaaaatctaacaaactatgtctttcaccctacaaaatggaggctttctggattcgagttccgttttttttctttttatgtgatcttggtctgattgaaaccttgtgatcgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01020.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964549|gb|GW838352.1|GW838352
EST:     CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAG                         TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT
genomic: CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAGgtcccttctt ... gtgatcgcagTTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT
EST: gi|110405980|gb|EC971538.1|EC971538
EST:     CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAG                         TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGC-
genomic: CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAGgtcccttctt ... gtgatcgcagTTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT
EST: gi|71857084|gb|DT006139.1|DT006139
EST:     CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAG                         TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGACT
genomic: CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAGgtcccttctt ... gtgatcgcagTTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT
EST: gi|110429540|gb|EC996035.1|EC996035
EST:     CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAG                         TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT
genomic: CTCACCATCTCGCCCACAGAACCTCCACTCGCTTCCTCGACATTTACCAGgtcccttctt ... gtgatcgcagTTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT