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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAGCGACGCCGCGTGCTGTATCGCGATTGCGGAGCGGATGATCGCGCTCGGCACTCATGACGGCACCGTGCATATTCTTGATCTTCTTGGCAATCAGgtaatccgattgatttgcggttcggaatttgagttgtttgatgaagttctcttaaattccatctattttccttctgatgtttgtctgtatgttattagta...

Basic information

species Vitis vinifera
transcript Vv06s0061g00940.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 1
ATCCAGCGACGCCGCGTGCTGTATCGCGATTGCGGAGCGGATGATCGCGCTCGGCACTCATGACGGCACCGTGCATATTCTTGATCTTCTTGGCAATCAGgtaatccgattgatttgcggttcggaatttgagttgtttgatgaagttctcttaaattccatctattttccttctgatgtttgtctgtatgttattagta---
  | || ||||||||||  || |||||  | ||||||||||||||||| ||||||||||| | ||||||||| || || || ||| |||| || |||||||| |  | |    | |||  |  |    ||| ||  || |  | | |||      |||   | |   ||    ||| ||||  ||    ||    | |     
TGCGAGTGACGCCGCGTCGTGCATCGCCGTCGCGGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtctac--gtctgccatctgtttgttgcgtaattcggcgtaattcgtcgcgattat-tgtgaatttgagctgttgttactcgaattggagctggctaga

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 1
ATCCAGCGACGCCGCGTGCTGTATCGCGATTGCGGAGCGGATGATCGCGCTCGGCACTCATGACGGCACCGTGCATATTCTTGATCTTCTTGGCAATCAGgtaatccga--ttgatttgcggttcggaatttgagttgtttgatgaagttctcttaaattccatctattttccttctgatgtttgtctgtatgttattagta-
  | || ||||| ||||  ||||||||  | |||||||| |||||||| ||||||||||| | ||||||||| || || || ||| |||| || |||||||| |  |||  |   |   | ||| |     | | ||||  |  ||   ||||   | | |  |  ||||     ||| | ||  ||    ||    | ||  
TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtc-gcggagagtctcgcgattactgtgaatttgag--ctgtttttgctcgaattggagctggtta