1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGAAGTATCTCTCCCTCTCGCTGAgtatgaatctttctcggactttctccacctttcatttccttgacagccaatcagtttattcgtagaatttatatttacgtttctttactttttcttgctttttcacag
species | Vitis vinifera |
transcript | Vv06s0061g00810.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTATCTCTCCCTCTCGCTGA ATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|26257279|gb|CA808342.1|CA808342
genomic: GTATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: TTTGAAGTATCTCTCCCTCTCGCTGA ATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|110383778|gb|EC948178.1|EC948178
genomic: TTTGAAGTATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: CCCTCTCGCTGA ATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|26262419|gb|CA813482.1|CA813482
genomic: CCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: TATCTCTCCCTCTCGCTGA ATC-AATCAAGAACCGAGT-AACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|71868904|gb|DT017959.1|DT017959
genomic: TATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: GTATCTCTCCCTCTCGCTGA AT-AAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|26257549|gb|CA808612.1|CA808612
genomic: GTATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: TTTGAAG-ATCTCTCCCTCTCGCTGA ATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAATEST: gi|110414078|gb|EC979902.1|EC979902
genomic: TTTGAAGTATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
EST: GTATCTCTCCCTCTCGCTGA ATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
genomic: GTATCTCTCCCTCTCGCTGAgtatgaatct ... tttttcacagATCAAATCAAGAACCGAGTAAACCCTAGTTGTTCATCTGTAGAATCTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAAGTATCTCTCCCTCTCGCTGAgtatgaatctttctcggactttctccacctttcatttccttgacagccaatcagtttattcgtagaatttatatttacgtttctttactttttcttgctttttcacag
TTGAAG