1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTTCCGCCGCCGATGCTAGATCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttttgatttcagctgaggcttctccttcaccttgtcatcttctttttcttttcaaaagtttagaagctaacagttttgttcagtggaataaat...
species | Vitis vinifera |
transcript | Vv06s0061g00300.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTG GTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGTEST: gi|110722828|gb|EE099442.1|EE099442
genomic: TCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttt ... ttgataatagGTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGT
EST: TCTTGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTG GTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGTEST: gi|110381813|gb|EC935451.1|EC935451
genomic: TCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttt ... ttgataatagGTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGT
EST: TCCGATTTGGCTTCGTCTTCTTCTTTTG GTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGTEST: gi|351046931|gb|FQ454541.1|FQ454541
genomic: TCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttt ... ttgataatagGTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGT
EST: TCTAGTTGGTGGTGGAGGGCTTTCCGATTTGGCCTCCTCTTCTTCTTTTG GTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGT
genomic: TCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttt ... ttgataatagGTACCTGGCATGTTGAAGTCTTATGTGCATAATTAGAGTCGTCTGGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCGCCGCCGATGCTAGATCTAGTTGGTGGTTTAGGGCTTTCCGATTTGGCTTCGTCTTCTTCTTTTGgtaaatcttttgatttcagctgaggcttctccttcaccttgtcatcttctttttcttttcaaaagtttagaagctaacagttttgttcagtggaataaat
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa