Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtattt-ccttctgaaacttttggtgcttctggttggtggctttat-gttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg
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TGGTGGATGCCATGGCCGTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCCAAGCTCAAAATGCTTCTCACATTCGTCGATAATCTCCCTAATGGgtaatcatctctttcttcttccaattgctttgcccattaactgtgccattgcacaaagttcgggtcttttacgttgctgctgaatgctgatgagcattcc--
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg-----
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TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCCAAGCTCAAAATGCTTCTCACATATGTTCATAATCTCCCTAATGGgtaatctaatcta-----ttcgttaattcctttctgctttgctatactccattgacattcaatcatatcatgttttctttgttgccactgggaatgattctgtta
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtg-gctttatgttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg---
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TGGTGGATGCCATGGCCGTCGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCCAAGCTCAAAATGCTTCTCACATTCGTCGATAATCTCCCTAATGGgtaaataaaatc--atctctttcttcttccaattgctttgccccttaactctgccatcgcataaagttc--ggctcttttgcgtttctgctgatgagcgtttct
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgttttttttggtt-tgttcctttccgggtccgtctcagtatcttcttgcgtgctcg
||||||| |||||||| || ||||||||||| || |||||||| || |||||||| |||||||||||||| | || |||||| |||| || || |||||||| | ||| || ||||| | | | || || ||| | | || | | || | | | | || |
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt-
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgtttttt---ttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg
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TGGTTGATGCTATGGCCGTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGATTTGCCCACTGGgtaatgatttctttccccagtagggatttctgttttt--ttttattcttcttagattagtgaacattgattgagtaatgtgtgaaagatgagtcctttattt-
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 1
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgctt-ctggttggtggctttatgttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcg-tgctcg---------------------------------------------------------------------------------------------------
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TGGTTGATGCCATAGCTGTGGAGATGCAAGCTGGTTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTTCCCAATGGgtgagattttgagata-tcccaatgcttgttgattatggtctttagaagagtttccctttagtttttatgggatttgat--gacatgatggtgcaatgtctggaaacatttgcttgttagttgtgtgaaatcgaaggtttttgttccttgattgtcacaatggaagtctcttgttgtaatatatgaacctttctatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721153|gb|FC070389.1|FC070389EST: GGTTCCAAGCTCAAAATGCTACTCACCTTTGTTGATAAGCTTCCGAATGG GAGTGAGAGAGGGAAGTATTATGCACTAGATCTTGGAGGTACAAATTTCAG
genomic: GGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttcctt ... ttttcttcagGAGTGAGAGAGGGAAGTATTATGCACTAGATCTTGGAGGTACAAATTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgttttttttggtttgttcctttccgggtccgtctcagtatcttcttgcgtgctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc