Sequence
atgc intronic sequence ATGC exonic sequenceTTTGTTTTGGCACTGTTATCAAGTGGGTTCATAGGCGCAAGCTTCATCATCAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttcttgtgtgttttcaattttgtcaagttttgatttttttctttttgagatgggtttttggttttctcaattgggtatgtgtttgattgcttgaatactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g43790.3 (Oryza sativa), 5'ss of exon 1
TTTGTTTTGGCACTGTTATCAAGTGGGTTCATAGGCGCAAGCTTCATCATCAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttcttgtgtgttttcaattttgtcaagttttgatttttttctttttgagatgggtttttggttttctcaattgggtatgtgtttgattgcttgaatactgcag
| || |||| || | || || || ||||| ||||| |||||||||||||||||||| ||||| | | || || | | || || | | || ||| | | | | |||| | |||| | ||||| |||| || | || |||||| |||| | ||||
ATCGTCCTGGCGCTCCTCTCCAGCGGCTTCATCGGCGCCAGCTTCATCATCAAGAAGAAGGGCCTCCGCCGCGCCGCCGTCGCCTCCGGCATCCGCGCAGgtcgcctccccaat-----cccgatttcctgttcttttt-tccttttcgttttctgaag----cttacttttcttggttggttttgtgcag-------------------
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 1
TTTGTTTTGGCACTGTTATCAAGTGGGTTCATAGGCGCAAGCTTCATCATCAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttcttgtgtgttttcaattttgtcaagttttgatttttttctttttgagatgggtttttggttttctcaattgggtatgtgtttgattgcttgaatactgcag
| | | || || | |||||||||||||| || ||||| || ||||| |||||| |||||||||||||||| || || |||||||| || || ||||||| | | || || |||||| || ||| ||| || |||||||||| | ||| | ||| || || | || || ||
CTCATACTAGCTTTGGTGTCAAGTGGGTTCATTGGGGCAAGTTTTATCATTAAGAAGCAAGGCCTTAGAAGAGCTGCAGCAGTTTCTGGTGTCAGGGCTGgtgggg------gagttttctcaatt-------------ataatttctatttggaagcttgtttttggttatgca---tggttttgtaatttttttttctcattttgtag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 1
TTTGTTTTGGCACTGTTATCAAGTGGGTTCATAGGCGCAAGCTTCATCATCAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttcttgtgtgttttcaattttgtcaagttttgatttttttctttttgagatgggtttttggttttctcaattgggtatgtgtttgattgcttgaatactgcag
| | | || || | |||||||||||||| || ||||| || ||||| || ||| |||||||||||||||| || || |||| ||| || || ||||||||| || | ||||| |||| || | || || ||| | ||| || |||||||||| | | | ||| || || | || || ||
CTCATACTAGCTTTGGTGTCAAGTGGGTTCATTGGGGCAAGTTTTATCATTAAAAAGCAAGGCCTTAGAAGAGCTGCAGCAGTTTATGGTGTCAGGGCTGgtgaggggatttctcctttttc--ttttttcta--ttagaatttcta--tttggaagcttgtttttggttatgcatgtc---tttgtaatttttttgtc--attttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718932|gb|FC067009.1|FC067009EST: CAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTG GAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGA
genomic: CAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttc ... aatactgcagGAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGTTTTGGCACTGTTATCAAGTGGGTTCATAGGCGCAAGCTTCATCATCAAGAAGAAAGGCCTTAGAAGAGCAGCTGCTGTTTCTGGGGTTAGAGCTGgtgagttttcttgtgtgttttcaattttgtcaagttttgatttttttctttttgagatgggtttttggttttctcaattgggtatgtgtttgattgcttgaatactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT