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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAACCTTCCTTCACTTTCTCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTGgtaaattaccctcttttccccctcttcttccataaaccctagttttatttaggtgattttctctctttccaaacagaaagcgaggatattgttggctttt...

Basic information

species Vitis vinifera
transcript Vv06s0009g01800.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724472|gb|EE100331.1|EE100331
EST:     TTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTG                         CAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCCCCTGGGCAGCTTA
genomic: TTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTGgtaaattacc ... ggttgtgtagCAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCCCCTGGGCAGCTTA
EST: gi|110707837|gb|EE084694.1|EE084694
EST:     TCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTG                         CAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCCCCTGGGCAGCTTA
genomic: TCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTGgtaaattacc ... ggttgtgtagCAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCCCCTGGGCAGCTTA
EST: gi|28962085|gb|CB341118.1|CB341118
EST:     TCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTG                         CAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCTCCTGGGCAGCTTA
genomic: TCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTGgtaaattacc ... ggttgtgtagCAAGGAAGGGTCAGGGAGGAACAATGGCTATAGCAGCCCCTGGGCAGCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCAACCTTCCTTCACTTTCTCTCTTAGCTCTAAACCCTTCTCCATCCTTCTCCCACACAATTCCCCCTGgtaaattaccctcttttccccctcttcttccataaaccctagttttatttaggtgattttctctctttccaaacagaaagcgaggatattgttggctttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggata