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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCACTCACACAGAGTGGAGGTATTGAGCATAGCCGTTGCTCTTGCAGCCATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctccttctatcttttcttttcctttttatttatttatttatttttaaatttttggcctgtttttggtatttctaaatctgataatagtgctttgg...

Basic information

species Vitis vinifera
transcript Vv06s0009g01710.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720681|gb|EE096826.1|EE096826
EST:     CATTGGCGCCGGAACCGCCTACTATTTCTATTTCATCAAAAAACCTAAAG                         GTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
genomic: CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctcct ... gccttaatagGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
EST: gi|71864812|gb|DT013867.1|DT013867
EST:     CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAG                         GTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
genomic: CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctcct ... gccttaatagGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
EST: gi|110688836|gb|EE067844.1|EE067844
EST:     CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAG                         GTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACG--CCC
genomic: CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctcct ... gccttaatagGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
EST: gi|110718332|gb|EE095045.1|EE095045
EST:     CATTGGCGCCGGAGCCGCCTATTATTTCTATTTCATCAAAAAACCTAAAG                         GTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC
genomic: CATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctcct ... gccttaatagGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCACTCACACAGAGTGGAGGTATTGAGCATAGCCGTTGCTCTTGCAGCCATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGgtttcctccttctatcttttcttttcctttttatttatttatttatttttaaatttttggcctgtttttggtatttctaaatctgataatagtgctttgg

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