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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACAAGAGCAACTCTCAAGCTCGAGAGGTAGACCACTTGTGATGCGGTGATGTGCTCAGATCCATCTTGCCCTCATGTATTTTAGCCATAATTGGATGgtactcggcctttatactctgcaacccatctttgattgatgatttcttactcctttattttaatttttaattttttaattgtttatttttaattcttttt...

Basic information

species Vitis vinifera
transcript Vv06s0009g00410.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319031|gb|CF371785.1|CF371785
EST:     GATGTGCTCAGATCCATCTTGCCCTCATGTATTTTAGCCATAATTGGATG                         GATTTGTGCAAGCAAAGCCGTGTCGGCGTCGACTGAATTGTGGAGAATATA
genomic: GATGTGCTCAGATCCATCTTGCCCTCATGTATTTTAGCCATAATTGGATGgtactcggcc ... ttgcttccagGATTTGTGCAAGCAAAGCCGTGTCGGCGTCGACTGAATTGTGGAGAATATA
EST: gi|110709006|gb|EE084088.1|EE084088
EST:     GATGTGCTCAGATCCATCTTGCCCTCATGTATTTTAGCCATAATTGGATG                         GATTTGTGCAAGCAAAGCTGTGTCGGCGTCGACTGAATTGTGCAGAATATA
genomic: GATGTGCTCAGATCCATCTTGCCCTCATGTATTTTAGCCATAATTGGATGgtactcggcc ... ttgcttccagGATTTGTGCAAGCAAAGCCGTGTCGGCGTCGACTGAATTGTGGAGAATATA