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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAGGCTGAGGTACCAGGGCTACTATTTCCTTGACCTCTCAGCTCGTGGCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttctcccccactccctccgctcccctctatcatgcatttccccatccatgcaaaaaggctgaattatgctctcttcttctttttctctttggccttggccgactgtag

Basic information

species Vitis vinifera
transcript Vv06s0004g08360.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G31620.1 (Glycine max), 5'ss of exon 1
CAACAGGC-TGAGGTACCAGGGCTACTATTTCCTTGACCTCTCAGCTCGTGGCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttctcccc-cactccctccgctcccctctatcatgcattt--ccccatccatgcaaaaaggctgaattatgctctcttcttctttttctctttggccttggccgactgtag
   || || | |     ||||| |||||||| ||||| ||  ||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||| ||||| ||||| |     |  |  ||  |    |   |||  ||| | |       | | |  |  |     | | | |  | | || |  ||| |      ||                
-GTCACGCCTCAAACGTCAGGGATACTATTTTCTTGATCTTACAGCTCGTGGCCTTGGTGATCCTGAAACCACCCTCACTAAGATTCACCCTGTTTGCCCTgtgagttttttttttcttttgcttagaagactcttatagtgcttgtagtgttgttctttgatcagaatcggagttttatat-ttgtagtttgtaataaagg----------------

upper sequence: Vv06s0004g08360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G05640.1 (Glycine max), 5'ss of exon 1
CAACAGG-CTGAGGTACCAGGGCTACTATTTCCTTGACCTCTCAGCTCGTGGCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttctcccccactccctccgctcccctctatcatgcatttccccatccatgcaaaaaggctgaattatgctctcttcttctttttctctttggccttggccgactgtag
   |  | || |    ||| || ||||||||||| |||||  | ||||||||||| ||||||||||||||||| |||||  |||||||||| ||||| ||||| ||||| |    ||   |        |    || | |   ||   |    | ||||   ||    |    |||| |   | |  || |       |  |||           
-GTCGCGTCTCAAACGCCAAGGGTACTATTTCCTCGACCTTACGGCTCGTGGCCTTGGTGATCCTGAAACCACCCTCACCAAGATTCACCCTGTTTGCCCTgtgagttttttttacaagactcttatagctgcttaactt---ttgtacagaacttgcatgcagttctataggtgcttttagcattgttcttcaaccagaattg-----------

upper sequence: Vv06s0004g08360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G58260.1 (Arabidopsis thaliana), 5'ss of exon 1
CAACAGGCTGAGGTACCAGGGCTACTATTTCCTTGACCTCTCAGCTCGTGGCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttctcccccactccctccgctcccctctatcatgcatttccccatccatgcaaaaaggctgaattatgctctcttcttctttttctctttggccttggccgactgtag
 ||| | || |     ||||||||||| || |||||| |||| ||||||||||| ||||| ||||| || || ||     |||   |||| ||||| |||||   | ||| |     ||| ||  || |  |  ||| ||  |      |    ||    ||   ||   |||  ||||||||| |                            
TAACCGTCTCAAAATGCAGGGCTACTACTTTCTTGACATCTCTGCTCGTGGCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgt--atgtctactttcatccatcttctacttta-atcttgtttcaatataattttgtgtgaaccatg---tatcttctcttcttttag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26257578|gb|CA808641.1|CA808641
EST:     GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCT                         GCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
genomic: GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttct ... ccgactgtagGCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
EST: gi|34415972|gb|CF414726.1|CF414726
EST:     GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCT                         GCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
genomic: GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttct ... ccgactgtagGCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
EST: gi|26258459|gb|CA809522.1|CA809522
EST:     GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCT                         GCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
genomic: GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttct ... ccgactgtagGCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
EST: gi|26257639|gb|CA808702.1|CA808702
EST:     GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCT                         GCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG
genomic: GCCTGGGTGATCCTGAAACCACTCTCACTGAGATTCACCCCGTTTGTCCTgttagtttct ... ccgactgtagGCTCACGTTGGGAAGCAGCCCATTGCAAGGTGGTATTTTCCCCCAGAAGTG