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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttcttctgccttttctcctaccgttccatttcattcgattcattctttcctacatatgtctcatcagttctcggttacgcgctttattatttg...

Basic information

species Vitis vinifera
transcript Vv06s0004g08260.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855083|gb|DT004138.1|DT004138
EST:     AGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: AGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|110727452|gb|EE104227.1|EE104227
EST:     TAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: TAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37187824|gb|CF607177.1|CF607177
EST:     GATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: GATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|71855806|gb|DT004861.1|DT004861
EST:     TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37189204|gb|CF608553.1|CF608553
EST:     CGGCAGCGATGAGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: CGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37187383|gb|CF606736.1|CF606736
EST:     AGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: AGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|71855126|gb|DT004181.1|DT004181
EST:     TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37187918|gb|CF607269.1|CF607269
EST:     AGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: AGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|161706626|gb|FC055043.1|FC055043
EST:     GGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: GGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|161707496|gb|FC056001.1|FC056001
EST:     GTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: GTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|161777255|gb|FC072670.1|FC072670
EST:     GGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: GGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37188515|gb|CF607864.1|CF607864
EST:     CAGCGGCAGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: CAGCGGCAGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
EST: gi|37188342|gb|CF607691.1|CF607691
EST:     AGCGATGGGAAGGA                         GGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC
genomic: AGCGATGGGAAGGAgtaagccttc ... acttttgcagGGCCTGCAAGGTGTTATCGTCAGATTAAGAACAAACCATACCCAAAGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGGGTTTCGTTAGCAGCAGCGGCAGCGATGGGAAGGAgtaagccttcttctgccttttctcctaccgttccatttcattcgattcattctttcctacatatgtctcatcagttctcggttacgcgctttattatttg

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