Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctttggggtttaggatttattttttccattgagcttatttacccttgaaattgggtttagggtttgatgttatctttcttttacccttcaaat...

Basic information

species Vitis vinifera
transcript Vv06s0004g08220.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 1
CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctttggggtttaggatttattttttccattgagctt--atttacccttgaaattggg----tttagggtttgatgttatctttcttttacccttcaaat
||||||||| ||||| || ||||| || ||  ||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || || ||||| ||  |||   |    ||| |   || ||||| | || ||  ||    ||||| | |  | ||      |||||||||  || |   ||||   || |  ||  | |
CCACCGCCACTCCAACGCGCTCGTCGAGGTGCTGCCGCCGGAGGCCGACTCCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAATgtcggtttcgttacattttg---ttgtttttcctatcgaattttaggttaccgtggcgaatgatgatttttagggttcaattt---cttttaattgcagtttgatt

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 1
-CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctttggggtttaggatttattttttccattgagcttatttacccttgaaattgggtttag----ggtttgatgttatctttcttttacccttcaaat
 ||||||||| ||||| || ||||| || ||  | ||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || || ||||| || ||||   |     |   ||   ||  |||| |  |   |||||| ||     |||   || |||    |||||  | || | ||  | ||      ||| |
TCCACCGCCACTCCAACGCGCTCGTCGACGTTCTTCCGCCGGAGGCCGACTCCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAAtgtcagtttcgttaccgtggcgaaagatcatttctag-ggttttatttcccac---aatcatgtctagtgctggtttagt-ttcttttagtgttgattggcaatt

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 1
CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctttggggtttaggatttattttttccattgagctt--atttacccttg---aaattgggtttagggtttgatgttatctttcttttacccttcaaat
||||||||| ||||| || ||||| || ||  | || |||||||||||||| ||||||||||| |||||||||||||| ||||| || || || ||||| || ||||  |    |||| |   || ||||  | || ||  ||    ||||| | |   ||  ||  ||   || ||   ||| |  | ||  |    ||     
CCACCGCCACTCCAACGCCCTCGTCGACGTTCTTCCACCGGAGGCCGACTCCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAATgtcagtttctatacgttttg---ttgttttccctatcgaattttaggttaccgtggcgaaagatgatttctagggttttcgttctagtgctggtttggttagg--

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 1
CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaag-------ttctttggggtttaggatttattttttccattgagcttatttacccttgaaattgggtttagggtttgatgttat-ctttcttttacccttcaaat
 ||||| || ||||| || || |||||||| ||||| |||||||| || ||||||||||| ||||||||||| || || ||||| || ||  |||| || ||||        || ||     | | |  | | |||| |  ||| |  |||       ||||||     ||| |  | | ||||  | |||| | ||    |  |   
TCACCGTCACTCCAACGCCCTTGTTGATGTTTTGCCTCCGGAGGCTGATTCTAGCATCTCCCTTCTCAGCCAATCTGAGAAGCCTGACGTCTCCTACAATgtaatgtttccttttttccaaatctcgactctgttttctgaattaaagttagg-gtttttgaaacgatctttggtttcttatgtggtgctttatctttttgtgtag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351056279|gb|FQ453741.1|FQ453741
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351055156|gb|FQ440495.1|FQ440495
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|349819102|gb|FQ411996.1|FQ411996
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110716340|gb|EE091246.1|EE091246
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351034889|gb|FQ458246.1|FQ458246
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351052176|gb|FQ450746.1|FQ450746
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351053459|gb|FQ456788.1|FQ456788
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110710810|gb|EE087291.1|EE087291
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351052953|gb|FQ453940.1|FQ453940
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351028659|gb|FQ446332.1|FQ446332
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|352798368|gb|FQ480393.1|FQ480393
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351041728|gb|FQ455938.1|FQ455938
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110687525|gb|EE065037.1|EE065037
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351048239|gb|FQ442209.1|FQ442209
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|71886091|gb|DT035146.1|DT035146
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110698101|gb|EE075727.1|EE075727
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351054918|gb|FQ440257.1|FQ440257
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110719059|gb|EE096604.1|EE096604
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351042351|gb|FQ442818.1|FQ442818
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110712358|gb|EE089887.1|EE089887
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110713479|gb|EE089446.1|EE089446
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351025471|gb|FQ435163.1|FQ435163
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351032271|gb|FQ461524.1|FQ461524
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351057108|gb|FQ450815.1|FQ450815
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351032557|gb|FQ458922.1|FQ458922
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110376068|gb|EC941108.1|EC941108
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351047055|gb|FQ454665.1|FQ454665
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|28968348|gb|CB347381.1|CB347381
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110708475|gb|EE086060.1|EE086060
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351036610|gb|FQ457323.1|FQ457323
EST:     CTAGTATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|352794472|gb|FQ481705.1|FQ481705
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351049223|gb|FQ449945.1|FQ449945
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351019208|gb|FQ429368.1|FQ429368
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351041731|gb|FQ455941.1|FQ455941
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351040377|gb|FQ434510.1|FQ434510
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351034948|gb|FQ458305.1|FQ458305
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTAATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110411515|gb|EC977232.1|EC977232
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351023094|gb|FQ430969.1|FQ430969
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|161717545|gb|FC068507.1|FC068507
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110690385|gb|EE067436.1|EE067436
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351040779|gb|FQ438323.1|FQ438323
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351032111|gb|FQ460368.1|FQ460368
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|110719093|gb|EE096678.1|EE096678
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
EST: gi|351040459|gb|FQ434592.1|FQ434592
EST:     CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAAC                         GATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG
genomic: CTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctt ... cttttattagGATATTGGAGGATGTGATATTCAGAAGCAGGAAATCCGTGAAGCTGTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCGCCATTCCAATGCTCTCGTTGATGTCTTGCCGCCGGAGGCCGACTCTAGCATCTCGCTTCTCAGCCAGTCCGAAAAGCCGGATGTTACCTATAACgtaagttctttggggtttaggatttattttttccattgagcttatttacccttgaaattgggtttagggtttgatgttatctttcttttacccttcaaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaattgg