1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTTGATACTGTGAAATCTGGAGTTCAATCGGCGGTTTCGAAAGAACGCCGCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttctagcttcttgttcttagtgtatgggcctgagtgttgggtcatgcatgtttcatatttgaagtctaagaaaaatcttagataaggtcatag...
species | Vitis vinifera |
transcript | Vv06s0004g07770.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAGEST: gi|352787091|gb|FQ476124.1|FQ476124
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAGEST: gi|352794906|gb|FQ477016.1|FQ477016
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAGEST: gi|352787014|gb|FQ476047.1|FQ476047
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAGEST: gi|352794915|gb|FQ477025.1|FQ477025
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAGEST: gi|294964613|gb|GW838416.1|GW838416
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
EST: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAAT GGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
genomic: GCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttc ... ttaattacagGGCTGCGATGCATCAGTCCTCCTCGACGACACCTCTTCCTTCACTGGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGATACTGTGAAATCTGGAGTTCAATCGGCGGTTTCGAAAGAACGCCGCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttctagcttcttgttcttagtgtatgggcctgagtgttgggtcatgcatgtttcatatttgaagtctaagaaaaatcttagataaggtcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa