1 5' 3' |
CCGAGTGGTGGTTCATGCTACTGCTGGGGCTGCAGCTGGGGCATTGGCTGCTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAgtaagtaatttattgttttcaaaaattcttccggcttgtttgatttcgctttgttgggtccacttttttatctagtcttttatatgcttacctgatgaag...
species | Vitis vinifera |
transcript | Vv06s0004g07350.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAA GGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTTEST: gi|110428608|gb|EC995085.1|EC995085
genomic: CTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAgtaagtaatt ... ggctgctcagGGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTT
EST: CTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAA GGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTT
genomic: CTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAgtaagtaatt ... ggctgctcagGGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGTGGTGGTTCATGCTACTGCTGGGGCTGCAGCTGGGGCATTGGCTGCTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAgtaagtaatttattgttttcaaaaattcttccggcttgtttgatttcgctttgttgggtccacttttttatctagtcttttatatgcttacctgatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatt