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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGgtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacag

Basic information

species Vitis vinifera
transcript Vv06s0004g07200.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g27980.1 (Oryza sativa), 5'ss of exon 1
GGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGgtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttct--ttttcttgt-tgtttgttacatatacag
|||||||||||| || || | ||||||  |||| ||||| ||||| || ||||| || |||||||| ||||| || |||||||||||||| ||| | |||||||           |   | ||  | | |  |     |   || | | |  | |      ||  || | ||| |  | |||  ||   |  |||  | |  | || ||||    ||| || |||
GGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCAGCAATGTCAGCAAGATGCTCCAGgtat-----------tgcacgaacacgtatgta-----taagctaggtcgtcatcaatggcggcgccaccgtgcatgcaagagcttacgtcgtctgatgtgatcgtgtgttcccaaca-atgcag

upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G06530.1 (Glycine max), 5'ss of exon 1
GGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGgtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcag--tgtaaactagattttcttttttctttttcttgttgtttgttacatatacag
 || || ||||||||||||||||| ||||| |||||||||| ||| ||||||||||| || ||||| || |||||||||||| ||||||||||| ||||||||||  |    ||     ||  |   |  ||  || ||   |  | ||   | | ||| |   ||||  |  | |||| |  |   |  ||| |||||                         
-GAATGTATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTGTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGtatctctaacttccctaccc--ttttttctctctttcttttcgtggttaccatcgtaactaagaccttcggctataaaattaacccttctttctctttaatc---------------------

upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G29450.1 (Glycine max), 5'ss of exon 1
GGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGgtatccatcttc--tcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcag-tgtaaactagattttcttttttctttttcttgttgtttgttacatatacag
 ||||||||||||||||||||||| ||||| || ||||||| ||| ||| ||||||| || ||||| || ||||| |||||| ||||||||||| |||||||||   |||      ||| | |  | | |  ||| || ||     | | | || |  |     || | | || |      |||| | |  |      ||                         
AGACTGCATCTTTGCTCCTTACTTTCCTTCTGACGACCCTCGCAAGTTTTCCATTGTGCATAAGGTCTTTGGTGCCAGCAATATCAGCAAAATGCTGCAGgtatatgtctctaactttcatacgcttctttctcattttctttttggttatcattgtatcgtaagacctttagcttcttggtagaatctgatcacgggtt-------------------------

upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G30130.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGgtatccatcttctcttcgtccaatc-catcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacag
 || |||||||| || ||||| || ||| | || || ||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| ||||||| ||  || |     |  | ||  |     |  | ||||||     |||  |||  |  |  ||      |  | |  |||   | |  ||  | ||                 
AGATTGCATCTTCGCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGgt-tccatctccttctcatttccccataactatatgctatatattggttttt---cttccatgatattttggtccg--ttgaaatcccttccatatgctttctatt-----------------