Sequence
atgc intronic sequence ATGC exonic sequenceCCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatgaaataatccctttacgtttcattatgtcgtttttggaattattagtttggtttcatgttttctttttatttattatctgtttggtcgctaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g18500.1 (Oryza sativa), 5'ss of exon 1
CCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatgaaataatccctttacgtttcattatgtcgtttttggaattattagtttggtttcatgttttctttttatttattatctgtttggtcgctaa--
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GCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGgtaaccactgctccatatcttattgattttccacgaagaca--ggaagcttttgtctaggagtttaaatttgatttggaaaatgcaagcttgtgcttgggat
upper sequence: Vv06s0004g07140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G007080_T01 (Zea mays), 5'ss of exon 1
CCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatgaaataatccctttacgtttcattatgtcgtttt-tggaattattagtttggtttca--tgttttctttttatttattatctgtttggtcgctaa
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GCGGCCGTGGAACCGATCCGGATGCCGACGGTGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTTCGCAGCGTCGTCAGTGGCGTCATGGgtgagctct---ctctctctctaattattactcgggtgcaaagtaaggcgtttggttttattataatcattttgtcttcttttcttgcctgtttagagatctt
upper sequence: Vv06s0004g07140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G01980.2 (Glycine max), 5'ss of exon 2
CCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgaga-atgaaataatc-cctttacgtttcattatgtcgtttttggaattattagtttggtttcatgttttctttttatttattatctgtttggtcgctaa
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CCTCAGATTGAGCCCATAAGACTGCCCTCAGTAGAGGAAATCCGTGGTCAAGACATTTGGAACAATTGTGCAGTGCGCAGTGTTGTCAGTGGAGTCATGGgtatgccattcaatcctcacttcttttttttttttttttcctgttttcctgatagattttagcacatatttcacctctgcttaatgatgcagaggtcata--
upper sequence: Vv06s0004g07140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G35780.1 (Glycine max), 5'ss of exon 2
CCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgaga-atgaaataatccctttacgtttcattatgtcgtttttggaattattagtttggtttcatgttttctttt--tatttattatctgtttggtcgctaa
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CCTCAGATTGAGCCCATAAGACTGCCCTCGGTAGAGGAAATCCGTGGTCAAGACATTTGGAACAATTGTGCAGTGCGCAGTGTTGTCAGTGGAGTCATGGgtatgccattcaatcctcacttcttcttttcttttttcttttttc---tttttttcctgtttttccgatagattttagcacatatttcacctctgcttaatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110361837|gb|EC925337.1|EC925337EST: AGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGG GAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATC
genomic: AGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatga ... atggttgtagGAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCAGATTGAGCCCATACGAATGCCCACAGTGGAGGAGATCAGAGGCCAAGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatgaaataatccctttacgtttcattatgtcgtttttggaattattagtttggtttcatgttttctttttatttattatctgtttggtcgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa