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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTTCTGTCTCTCCGAACTCTACCGTCAAAGACCTCAAGTCTCTTCTCCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccctctttacaaatcacgaaaccctagatattttctcaagaaacaaacacgaggaagaaattggttcttgatggtttctgtttgcgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g07050.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G06630.1 (Glycine max), 5'ss of exon 1
CCTGTTTCTGTCTCTCCGAACTCTACCGTCAAAGACCTCAAGTCTCTTCTCCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgt----cttttccctctttacaaatcacgaaaccctagatattttctcaagaaacaaacacgaggaagaaattggttcttgatggtttctgtttgcgcag----
 |  | ||  |||| || ||||| ||| |||||||||||||||| |||||    |||  ||||||||||||  |||| || ||||||||||| |||||||||    | |||  |||| |     || |   | | |  |     ||  |||||| |||| |         |||  || ||||          ||    |     
-CCATCTCAATCTCACCCAACTCAACCATCAAAGACCTCAAGTCCCTTCTTTTACCTTCCACCAATGTCCTCCCTCGTGGCCAAAAACTCATCTTCAAAGGtttcacctttttctctctctctttctcattatcattca-gcactcataagaaagaaaccccttttgttcattc-ttgttgaaatcaatgaattatctaacagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584926|gb|DV221546.1|DV221546
EST:     CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAG                         GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
genomic: CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccc ... gtttgcgcagGGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
EST: gi|30322614|gb|CD005876.1|CD005876
EST:     CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAG                         GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
genomic: CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccc ... gtttgcgcagGGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
EST: gi|37189688|gb|CF609037.1|CF609037
EST:     CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAG                         GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
genomic: CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccc ... gtttgcgcagGGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
EST: gi|30326528|gb|CD009790.1|CD009790
EST:     CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAG                         GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
genomic: CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccc ... gtttgcgcagGGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
EST: gi|30325613|gb|CD008875.1|CD008875
EST:     CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAG                         GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG
genomic: CCAGCCTCTCACCAATGTCCTTACTCGGGGACAAAAACTCATTTTCAAAGgtcttttccc ... gtttgcgcagGGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATG