1 5' 3' | 2 5' 3' | 3 5' 3' |
GACACTGTGAAGCTGATCAGCGCAGAGGGCTTCGAATTCGTGATCGACAAGAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttccgtttttattttctcgagacgattaggctactagaaaacgtaggaaaaaggaaagaaattaaattcttgaatcggaggtttattttattta...
species | Vitis vinifera |
transcript | Vv06s0004g05560.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|34319622|gb|CF372376.1|CF372376
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|30326539|gb|CD009801.1|CD009801
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|77582862|gb|DV220412.1|DV220412
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|30134710|gb|CB920048.1|CB920048
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110401168|gb|EC967768.1|EC967768
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110421660|gb|EC987960.1|EC987960
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|30330192|gb|CD013454.1|CD013454
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110418444|gb|EC984601.1|EC984601
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|32271968|gb|CD721127.1|CD721127
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110408935|gb|EC974583.1|EC974583
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|77578008|gb|DV217766.1|DV217766
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110392803|gb|EC957238.1|EC957238
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110371311|gb|EC935227.1|EC935227
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|71861463|gb|DT010518.1|DT010518
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|110701302|gb|EE078715.1|EE078715
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCAEST: gi|22010533|gb|BQ795567.1|BQ795567
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
EST: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCG GGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
genomic: GAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttcc ... tcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACTGTGAAGCTGATCAGCGCAGAGGGCTTCGAATTCGTGATCGACAAGAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttccgtttttattttctcgagacgattaggctactagaaaacgtaggaaaaaggaaagaaattaaattcttgaatcggaggtttattttattta
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