1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGTCCCAAGAACTCAGTCTCTTGCGTCGCTGATTTCTTGGGGAGGTTTTCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttctttttggttttctcttgtctctgtttggtagccaggaaattggtggaaacgaaaaggaaagaaaaggaaaaaggattgggaattttgcaa...
species | Vitis vinifera |
transcript | Vv06s0004g04890.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|110701018|gb|EE078179.1|EE078179
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|110412849|gb|EC978612.1|EC978612
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|349825356|gb|FQ418077.1|FQ418077
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351012669|gb|FQ430232.1|FQ430232
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|110689118|gb|EE065062.1|EE065062
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGATCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351016069|gb|FQ432024.1|FQ432024
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|161721553|gb|FC070095.1|FC070095
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351031206|gb|FQ445033.1|FQ445033
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351025014|gb|FQ433431.1|FQ433431
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|110702261|gb|EE080769.1|EE080769
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351023516|gb|FQ432899.1|FQ432899
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|351042831|gb|FQ434393.1|FQ434393
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAAAAAATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATEST: gi|71869620|gb|DT018675.1|DT018675
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCAT
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|110382751|gb|EC947072.1|EC947072
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|349826702|gb|FQ418793.1|FQ418793
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGGGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAEST: gi|349828349|gb|FQ416302.1|FQ416302
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
EST: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCAC CCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
genomic: TCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttc ... ttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTCCCAAGAACTCAGTCTCTTGCGTCGCTGATTTCTTGGGGAGGTTTTCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACgtgagttttctttttggttttctcttgtctctgtttggtagccaggaaattggtggaaacgaaaaggaaagaaaaggaaaaaggattgggaattttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa