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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATCAGAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattcctttttctttttttcttttttaattttattttccaatttggattcgaatttgtgttaatcttcaaaaagagtaatgggattcttgtttcgggcgaagggatttgatttacgggaatgagagagcattttttttccttgcgtgtaggactcatctttaagtgaagttgggtttgatttgtggtaacag

Basic information

species Vitis vinifera
transcript Vv06s0004g04390.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409748|gb|CF215375.1|CF215375
EST:     G-AAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGGATTGAT                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|33408202|gb|CF213829.1|CF213829
EST:     AGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: AGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|71879035|gb|DT028090.1|DT028090
EST:     GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|71879209|gb|DT028264.1|DT028264
EST:     GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|33407209|gb|CF212836.1|CF212836
EST:     GCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|37190531|gb|CF609880.1|CF609880
EST:     GTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|71881039|gb|DT030094.1|DT030094
EST:     GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: GAAAAGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|33407983|gb|CF213610.1|CF213610
EST:     CTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAACACTTCGAATGG
genomic: CTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
EST: gi|33406260|gb|CF211887.1|CF211887
EST:     AGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAG                         GTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG
genomic: AGCTAATTAGGTTTTTGGGTGATTTTCCTCGAAGGCTAGCAATCAGgtttatattc ... gtggtaacagGTCTTGAGTTTGAGAGGAGATCTGAGCAATGGCAAAGAATACTTCGAATGG