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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACGTCCAGTACAACGTGCTCGGTAACCTCTTCGAGGTCTCGGCTAAGTACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGgtgagattttctcggctttttattttttggcttattggattctaaagtgctattttggctggcattttggaagtgtttttctttctttttgagagctgtc...

Basic information

species Vitis vinifera
transcript Vv06s0004g03620.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966607|gb|GW839598.1|GW839598
EST:     TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTG                         CTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG
genomic: TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGgtgagatttt ... ctgactacagCTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG
EST: gi|352768505|gb|FQ467461.1|FQ467461
EST:     TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTG                         CTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG
genomic: TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGgtgagatttt ... ctgactacagCTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG
EST: gi|32268188|gb|CD717347.1|CD717347
EST:     TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTG                         CTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG
genomic: TACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGgtgagatttt ... ctgactacagCTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGG