Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta...

Basic information

species Vitis vinifera
transcript Vv06s0004g03360.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta
       || || |||||  | ||||| |||||||||||||| || || ||||| || || ||||| |||||||||||||| || || ||||| || ||||    | |  || | |  ||| ||       ||  ||  || |||| |  || ||  | |||   | | ||     ||| |   || |  |   | | || ||   
AAAGCTCTCTGTAGGTTATACTTTGGACCAGATTCCAAATGATATTACGAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGACTACGTGGTCACTAAGg----tttgctttttccctctgtttctaagatttcttgggc-aatgatatttggtgcactgtgcaattgttgcatttttcatccttattttagaagctatcttgc-

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta-
       || || || ||| |  | ||||||||||| ||||| || || ||||| || || ||||| || ||||||||||| ||||||||||| ||||||| |  | |     ||  | || ||    |  ||| || ||  ||||    |||         | | | || ||   |    | || || |  |  || || |||   
GAAGCTCTCAGTAGGCTACACTCTAGATCAGATTCCCAATGATATTACCAAGAAGACTCCAGCTAGCTTCGAGCCTTCCATTGATTATGTGGTTACAAAGgtat-tattccaatctgt-ctcttagctttcttaattgtgtgaatgaagtttttcctgcaaatat-gcatctgcagt----acatatttaacttctctatattcctt

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G061990_T01 (Zea mays), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta
      ||| || || ||| |  |||| |||||||| ||||| || || ||||| || || ||||| || ||||||||||| ||||||||||| ||||||| |    |       || | | |     |  ||| ||  || ||||    ||| |       | | | || ||   | |  ||||||| |  || ||  | |||  
AAAGCTGTCAGTAGGCTACACTCTGGACCAGATTCCCAATGATATTACCAAGAAGACTCCTGCTAGCTTCGAGCCTTCCATTGATTATGTGGTCACAAAGgtatcatttcaatctcagtttctcagctttcttagttgcgcaaatgaagttttttccgcaaatat-gcatctgcagtat--atatttt-acttc-tctgtattcc-

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatatt-ttcatgtcatcgatgttcta
      ||| || || || || ||||||||||| ||||| || || || ||||| |||||||||||||||||||| || || ||||||||||| || |||| |||   |||  |   | ||  | |     | ||  || | |||||  ||| ||    |||| |    |||    | | ||| || |  | || ||   |      
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcat--ataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc-----

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta
      ||| || || || || |||||||| || ||||| || || || ||||| |||||||||||||||||||| || || ||||||||||| || |||| | |   |||  |    |  ||  || |  |    ||| | |||||  ||| ||    || | |    |||    | | |||   ||  | |  | | |      
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttg--ttgatgatattgctatgatataccaatgtgacttggtaggatggttttaattttaaattgtaaat---tttgtatagttggtaagtc-

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatat-tttcatgtcatcgatgttcta------------------------------------------
      ||| ||||| ||  | |||||||||||||| ||||| ||||| | ||||||||||||||| || ||||| ||||| |||||||||||||| ||||    | | |   ||||| || |||   |  ||  |  ||| ||      |  | |     ||| ||  ||   ||  |  ||    ||||||  ||  |   || |                                          
CAAGTTGTCTGTTGGCTATACCTTGGATCAGATTCCTAATGATATCACGAGGAAAACACCGGCTAGCTTCGAGCCCTCCATCGATTATGTGGTGACTAAGg----tttgtcattccatacttttggctttatttgtgttgcgaaatgagatacgcttgactttgaagatttacacacatctatccacttcatgatatataaactcaaatgcatattttgcttaacgatatctatttctttaccatgcag

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCA-AGTgtctttctcca------ttctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatt----tggcatttgaatattttcatgtca---tcgatgttcta----------------
       || || || ||| |||||||||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||| || || || || || ||||   ||  |  | | |||      ||||||  |       |||  || || |  |  | | || |     |   ||||    ||  ||  ||| ||   |   ||    |   ||| |                  
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ17598 (Selaginella moellendorffii), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgta-gtatttggcatttgaatattttcatgtcatcgatgttcta
      |||||| || ||| |  |||| |||||||| || |||||||| | ||| || || |||||||||||||| ||||| || || |||||||||||||  ||  | ||| | |  | | || | ||   |  || |  |||      || |||  |  ||||| || |   |                                
CAAGCTGTCGGTGGGCTACACTCTGGACCAGATTCCCAACGACATCACCAGGAAGACGCCTGCTAGTTTTGAGCCATCCATTGACTACGTGGTGACAAAGgtcagc-tttttttgcgctttttttttctc-ctgcttcttttaaaacactttcgttt-tctttgtatgtgtgcag--------------------------------

upper sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ29065 (Selaginella moellendorffii), 5'ss of exon 1
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgta-gtatttggcatttgaatattttcatgtcatcgatgttcta
      |||||| || ||| |  |||| |||||||| || |||||||| | ||| || || |||||||||||||| ||||| || || |||||||||||||  ||  | | | | |  | | || | ||   |  || |  |||    | || |||  |  ||||| || |   |                                
CAAGCTGTCGGTGGGCTACACTCTGGACCAGATTCCCAACGACATCACCAGGAAGACGCCTGCTAGTTTTGAGCCATCCATTGACTACGTGGTGACAAAGgtcagc-tttatttgcgctttttttttctc-ctgcttcttttaaaacattttcgttt-tctttgtatgtgtgcag--------------------------------