Sequence
atgc intronic sequence ATGC exonic sequenceTCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatcatctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os12g33070.1 (Oryza sativa), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtcc--ttcatcatctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaa--aaaccatcacatgtcgcttgatcagttttg
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TCCGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCGCCTTCTCGCCGCAGGAGGAGGACCTCATCGTCAACCTCCACGCCATCCTCGGCAACAGgtgcagctaatcagttaactataagctcc--tacgactaagtagtacctaattaattaattaccatgattaattaagctttaatatattaggagattgattc--
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G052606_T01 (Zea mays), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatcatctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg---
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TCCGGTGGATCAACTACCTCCGGCCGGACCTCAAGCGCGGCGCCTTCTCGCCGCAGGAGGAGGAGCTCATCGTCAGCCTCCACGCCATCCTGGGAAACAGgtagctatacgcgagcatacacgtacctgcagtatatatatggagagttttaatttatgg---gtgttgatgattatctcgcttcgcaagcacacttttatta
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G06180.1 (Glycine max), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatcatctctctctgttctccattttaatttcctcccttcctag-taattcaaaat-ccatctcaaaaaccatcacatgtcgcttgatcagttttg
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TTCGATGGATCAACTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACAACAAGAAGAGGAACTCATCATCCACTTGCATTCCCTTCTCGGAAACAGgttcacctagccttcttttctacctacatatgcatattctctagccaaaactcatccattttgttaccacatattttattaattcatgcatcattaacaa--
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G14200.1 (Glycine max), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatcatct-ctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg--
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TTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAAATCATCATCCATTTGCATTCCCTTCTCGGAAACAGgtacaatatcctctacacccttcttttctacctacatatgcatgtttttatta---ccatatttgtatgatcatgcatctttaactatatatgccataatgca
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G03920.1 (Glycine max), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcat-catctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg
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TTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGgttcatcttatatatatgatcatt-tccactccatcacccttatattatgatataagtttatccataatcttcattaccaattattaattctatagatcca
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G41470.1 (Glycine max), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcat-catctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaa--accatcacatgtcgcttgatcagttttg
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TTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGgttcatcttatgatcatttttccactccatcacccttacaaattatatccatgatataaggttcatctatatataatctttattaccaatattatagatc---
upper sequence: Vv06s0004g02110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G08500.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtc--cttcatcatctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg
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TTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAGgtaaactttacaatgagtctcag------atttgaaacaatttggccctaaatgattttag------tgcataactgtttacattttatc--gtcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714496|gb|FC064465.1|FC064465EST: CCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAG GTGGTCTCAAATTGCGGCCCGCTTGCCAGGACGTACTGACAATGAGATAAA
genomic: CCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatc ... ttgtctgaagGTGGTCTCAAATTGCGGCCCGCTTGCCAGGACGTACTGACAATGAGATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGgtccttcatcatctctctctgttctccattttaatttcctcccttcctagtaattcaaaatccatctcaaaaaccatcacatgtcgcttgatcagttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaac