1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTTCTTTTCGGATTTTTAGAGGCGGAGAGCATCAATGGATTCTCAGGTCATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAGgtatgggaaacttgttttcttgtacttcagtgaaaattgaaaaatgggttttgttcaatatggttgtgattttcaatttacagcaaattattctttgagt...
species | Vitis vinifera |
transcript | Vv06s0004g01860.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGTACTTCTATAG GTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCEST: gi|110693804|gb|EE070356.1|EE070356
genomic: GAGTACTTCTATAGgtatgggaaa ... atgtggacagGTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGC
EST: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAG GTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCEST: gi|110689440|gb|EE065664.1|EE065664
genomic: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAGgtatgggaaa ... atgtggacagGTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGC
EST: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAG GTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCEST: gi|110698572|gb|EE076222.1|EE076222
genomic: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAGgtatgggaaa ... atgtggacagGTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGC
EST: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAG GTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGC
genomic: CATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAGgtatgggaaa ... atgtggacagGTGCACTTTTTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTCTTTTCGGATTTTTAGAGGCGGAGAGCATCAATGGATTCTCAGGTCATGGTTGCTCTTGGTCTGTCACTTGTGGGCGGAGCGAGTACTTCTATAGgtatgggaaacttgttttcttgtacttcagtgaaaattgaaaaatgggttttgttcaatatggttgtgattttcaatttacagcaaattattctttgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcaaa