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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTTCTTCAGAACCCAATTTTCAAATCCCCCTTAACCACCAGACCCTAAATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgtttggtttcactcgttccttttgttattttgaatttttatgggcaatgttgttttgggttttgtgtttttttctcttatatctgttttttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g01310.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351029554|gb|FQ427394.1|FQ427394
EST:     AATTACTTCCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC
EST: gi|349827600|gb|FQ422468.1|FQ422468
EST:     AATTACTTTCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC
EST: gi|351014663|gb|FQ437665.1|FQ437665
EST:     AATTACTTTCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC
EST: gi|71854871|gb|DT003926.1|DT003926
EST:     AATTACTTTCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC
EST: gi|349828693|gb|FQ418428.1|FQ418428
EST:     AATTACTTTCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC
EST: gi|351043798|gb|FQ431350.1|FQ431350
EST:     AATTACTTCCCCCTGTTTTCATATCACAGCGGAGTTTTCCATCCCAATAG                         ATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCTGAAAATGGCAGCAACTGC
genomic: AATTACTTTCCCCTGTTTTCATATCACAGCGAAGTTTTCCATCCCAATAGgtaattttgt ... ttctctccagATTTCTGTTTTCCTCTGCAAGATTCAAGTTGCCGAAAATGGCAGCAACTGC