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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTAGTCGCTTCAGATATACCTGCGCACCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctctcttaaaccctaattccatcactcgttcctctttttctgcttttcaatctttattttctcttttgtatgttaaggcactgtttgttttgta...

Basic information

species Vitis vinifera
transcript Vv06s0004g00240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685246|gb|EE063449.1|EE063449
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|110725842|gb|EE102769.1|EE102769
EST:     CTAGCTTCTCTTCCG                         TTTTTAAAGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCT
genomic: CTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|351022807|gb|FQ428716.1|FQ428716
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|351024818|gb|FQ430643.1|FQ430643
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|349833403|gb|FQ420149.1|FQ420149
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|29782617|gb|CB348122.2|CB348122
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|30256253|gb|CB972096.1|CB972096
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|110689447|gb|EE065678.1|EE065678
EST:     TTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
genomic: TTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|351040630|gb|FQ438174.1|FQ438174
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: gi|351025708|gb|FQ426722.1|FQ426722
EST:     CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG                         TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTGTGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT