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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGTGTCTTATCATCAGTCTCTACGCAAATAAGGAAGCCTTGGGAGAAGAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaattctccctatctctctctctgctttcttctatgttttcaacctagacatggggttttatgaattcacagtctaagctcaagatccctcctcc...

Basic information

species Vitis vinifera
transcript Vv06s0004g00060.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688296|gb|EE066688.1|EE066688
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|110711311|gb|EE087659.1|EE087659
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|161706713|gb|FC055892.1|FC055892
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|110713034|gb|EE088602.1|EE088602
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|110692596|gb|EE072018.1|EE072018
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|71859349|gb|DT008404.1|DT008404
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|71857308|gb|DT006363.1|DT006363
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|161716048|gb|FC069121.1|FC069121
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|294966527|gb|GW837662.1|GW837662
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|110693463|gb|EE069714.1|EE069714
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
EST: gi|110688262|gb|EE066614.1|EE066614
EST:     GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTG                         GTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG
genomic: GAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaatt ... gctcctgtagGTAAAAATGAAGACCTTTGTGGTTTCGTTATTGATGGTTTTGCTCGTGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCGTGTCTTATCATCAGTCTCTACGCAAATAAGGAAGCCTTGGGAGAAGAAAGCCATCGAAATCCATTCTTCTGGATCCAACTCCTGGGGCCTTTGTGgtaagaaattctccctatctctctctctgctttcttctatgttttcaacctagacatggggttttatgaattcacagtctaagctcaagatccctcctcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcct